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Wanted to give the new libraries a whirl and figured I would make a couple of notes as I go along. I will try to resolve these issues / features this weekend or something as many of them are "optional…
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**User story**
**Preferred solution**
- [ ] Implement for OME-Zarr, MuData-Zarr, and SpatialData-Zarr
- [ ] Implement for Genomic Profiles - see https://github.com/vitessce/vitessce/issues/1856…
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### Discussed in https://github.com/libvips/libvips/discussions/3516
Originally posted by **jstriebel** May 30, 2023
It would be great if libvips could support [Zarr](https://zarr.dev), and po…
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Hi!
I am looking for ways to make the interaction of NRStitcher easier with Webknossos because converting the input and output data has become quite a time sink. I was wondering if you were plannin…
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When a zarr array is in C-order, N5 internally reverses the `shape` of the array. This means ome-zarr axes also need to be reversed. This is the current behavior, and is correct.
However, when a za…
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`omero zarr export` can write OME-NGFF from OMERO images using either `bioformats2raw` or `ome-zarr-py` depending on whether the `--bf` flag is passed.
As of the 0.3.0 release, `omero-cli-zarr` wil…
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I'm a big fan of the new `image_glob_patterns` for testing & flexibility.
One thing I just thought about: Can we use the `image_glob_patterns` to exclude specific things, e.g. exclude well B05 and B0…
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I think labels are not yet supported.
These datasest have labels and may be used for development:
- https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.1/plates/2551.zarr (broken label subsampling)
- …
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## Description
Can get into a state where the time slider stops moving during playback.
## Expected Behavior
Time slider should move during playback.
## Reproduction
https://dev-aics-dt…
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After talking with the BioImage Archive people, I think implementing OME-zarr support (remote and local) would be a HUGE driver for adoption. Here's some samples I got from them:
1. The first one, …