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Hi,
I installed Plink2 on two new virtual computers. Plink successfully generated results on the first data set. However, I have an issue on the second run, the program stuck at 'start searching of …
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I am assisting a user to use plink2 on our HPC cluster and your versioning course issues for us.
i.e. using the same version for different releases and distinguish them using a date in brackets.
…
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Dear REGENIE developers,
I'm using REGENIE v3.5.gz on 237 cases and 387 controls. Genotypes of my samples were jointly called from WGS data, which had 50,811,891 variants. It was mentioned that 44…
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Hi Chang,
It seems that PLINK 2.0 depleted the function for checking sex using inbreeding coefficient. Is there any way in PLINK 2.0 to impute sex from the genotypes?
PLINK v2.00a2LM 64-bit Intel (1…
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Is it possible to implement an improvement to this flag to allow for multiple INFO filters in the initial vcf to pgen conversion?
`plink2 --vcf file.vcf --extract-if-info "A == 1" --extract-if-info…
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E.g. via a `snp_readPgen()` function analogous to `snp_readBed()`.
The plink2 binary format (https://www.cog-genomics.org/plink/2.0/input#pgen) has several advantages over the plink1 binary format …
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Hello,
I'm using Regenie v3.2.9
I run the low variance plink fix after getting the error running Step 1:
`plink2 \
--bfile subjects_sex \
--chr 1-23 \
--mac 100 \
--write-snplist \
…
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### Description of the bug
I ran the current version of pgsc_calc with 63 scorefiles on a single sample and got this error:
```
FATAL: container creation failed: mount /proc/self/fd/4->/usr/l…
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Seeing segfaults when building PLINK2 in a Rocky 8 container:
```
+ /apps/eb/el8/2023a/skylake/software/PLINK/2.00a3.7-gfbf-2023a/bin/plink2 --pfile plink2_data --keep sparse.fam --extract extract.t…
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Hi,
pLink2 keeps getting stuck at this point below. I have checked that the files are in the folder ( See image, e.g. 2aRB_HCDFT.pf2). I have uninstalled and reinstalled MSFileReader. I would appr…