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Hello !
I have a question more than an issue, but maybe you can help me,
I am annotating a dozen of arthropods assemblies from a same genus with braker3 (arthropoda prot + RNAseq data),
For a…
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Hi,
Thank you for providing this software. I have some questions about its usage that I was hoping you might be able to answer.
1. In the tutorial, bdat_initial is the gene x sample matrix for…
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Hi!
This is a set of dumb questions, not an issue - but that isn't a category!
I am new to version 3, and I would like to use it for annotating RNA viruses I have already curated the sequences f…
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This seemed to anger the validation guards at ENA:
```
19094 20750 gene
gene N
19094 20750 CDS
product nucleocapsid phosphoprotein
…
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Hello, I have problem to understand properly the scale of the pseudotime heatmap going from 2 to -2,
after selecting genes with a menlogFC >=1 and p.adj
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Hello, sorry to bother you again. When I used hmmscan to predict genes in my strain genome (all contigs were translated into amino acid sequences, see genome file contents in Attachment 1)
![Attachme…
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https://asia.ensembl.org/info/docs/tools/vep/script/vep_download.html#new
The most useful upgrade is summary stats, which we could use for CNVs
There are new plugins, some probably already available…
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# Intro
- Problem statement:
* NCBI records vary in quality
* not available for download as a single data set
* annotation not consistent or difficult to piece together
- Previous 16S data…
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Make sure missing translations of HPO terms are not omitted in non-English prompts. As of now, for instance, a phenopacket with "Short Eyelashes", for which we don´t have an Italian translation, will …
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![Screenshot 2023-10-23 at 10 48 29](https://github.com/microsoft/zero-shot-scfoundation/assets/31646044/52eed8ba-4e7c-4406-962d-7a8523cacdda)
Quick question about Figure 6c (above). From the paper…