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Hi all,
I made a pull request with three exemplary annotations for MSI data to start a discussion: https://github.com/bigbio/proteomics-metadata-standard/pull/450
Here are some thoughts about t…
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Dear statOmics Team,
Thank you for the great msqrob2 package. Msqrob2 is built for proteomics experiments but seems to be a powerful tool to analyze my metabolomic data. I am currently using your c…
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# Abstract
Methods to represent multiple spectra
Spectral library searching offers a sensitive yet fast method to match spectra from mass spectrometry-based proteomics experiments. The techn…
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# Problem
We have been instructed to accept submissions in annData files where gene expression quantifications have been generated by external groups and raw data are not available. We have no cont…
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Peptides FDRs do not correspond to protein FDRs.
Currently, large-scale studies often have dozens or hundreds of LC-MS runs that are being accumulated. Repeated measurements lead to an accumulation o…
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Create a section for each environment that helps a user transition to using the tool/environment in AnVIL
┆Issue is synchronized with this [Jira Story](https://ucsc-cgl.atlassian.net/browse/ANVIL-8…
kozbo updated
3 years ago
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Hi Phil,
I am starting to use PAW pipeline in my TMT studies. The transparency of the workflow and the flexibility is awesome! Although I am not acquainted with Python scripts, I think it is possible…
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Hi,
How is the Q.Value in the report.tsv calculated?
I noticed across multiple experiments that the Q.Values have a strange distribution. For instance, I searched the "RD139_Narrow_UPS1_25fmol_inj…
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Hi, great tool!
To make it even better, it would be nice to also support protein level result export to .txt/.tsv, as is implemented for the peptide level table.
at least pFind.protein cannot read…
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We are currently trying to validate our series 3 target. @danaklug has done some reading on target validation and we would love some feedback on the definition.
Our definition can be found [here](…