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Hi
I am getting the following error when aligning my 5' 10X CRISPR scRNAseq data using alevin fry:
/mnt/dv/wid/projects6/Roy-singlecell3/sridharanlab2/data/perturb-seq_on_reprogramming/fastq/G…
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Hello,
we have noticed some unexpected behaviors when fine-tuning a llama 3 model on 1 gpu and when fine-tuning the same model on the same data set with 2 gpus in parallel mode. See the attached te…
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from trl import SFTTrainer
from transformers import TrainingArguments
from unsloth import is_bfloat16_supported
trainer = SFTTrainer(
model = model,
tokenizer = tokenizer,
train_da…
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コマンドが以下になっておりますが、後半の{sample}_2.fastq.gzは${sample}_2.fastq.gzと書かなければrror: file not found ../seq/{sample}_2.fastq.gzとエラーメッセジー字がでます。
cat ../seq/run_ids | while read sample; do echo processing{sample};…
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I propose these changes to the run-information-batch-001.csv, run-information-batch-002.csv, run-information-batch-001_column-descriptions.csv and run-information-batch-002_column-descriptions.csv:
1…
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We should consider generally updating links to OSCA to use URLs with `release` instead of a version, e.g. `http://bioconductor.org/books/release/OSCA.basic/` instead of, for example,`http://bioconduct…
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We could add a quick and dirty plot for FEVDs:
```r
library("BVAR")
example(bvar) # Use example data
fevd_data
nk027 updated
4 months ago
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Hi, for the following formula,
boolector 6fce0ac
~~~~
(set-logic BV)
(declare-fun _substvar_16_ () Bool)
(declare-fun _substvar_17_ () Bool)
(declare-const v0 Bool)
(declare-const v7 Bool)
(de…
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After processing some PDB files from [PINDER](https://github.com/pinder-org/pinder) with `process_pdb_files.py` when running the training I get
```
python -W ignore experiments/train_se3_flows.py da…
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When a fastq has a missing 1st entry (due to short reads and trimming) seqkit seq infers that the type of sequences in the file is "unlimit" rather than "dna": https://bioinf.shenwei.me/seqkit/usage/#…