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**Describe the bug**
Some CLI parser tests in `test_hazenlib` fail when run in PyCharm Windows. File paths are passed using a *nix format rather than platform independent format.
**To Reproduce**
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Many of the hazen Tasks are performed on a single DICOM file. However, some of them require different inputs. For example, the `snr` task requires two files and the `slice_position` task requires a fo…
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Currently, it's not entirely clear which functions provide additional output when using the `--report` option. Furthermore, the output images are saved in the directory where the hazen command was run…
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**Describe the bug**
The relaxometry task fails when run from the command line when hazen has been installed using pip. The template files (used to how to translate / rotate the ROI coordinates to al…
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For PD+T2 images created from a single series (two echos), our conversion tool (heudiconv) is encouraging us to use `_PDT2` for modality type, creating two NIFTI+json pairs, one for PD and one for T2,…
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**Submitting author:** @mathieuboudreau (Mathieu Boudreau)
**Repository:** https://github.com/qMRLab/t1-book-neurolibre
**Branch with paper.md** (empty if default branch): main
**Version:** v1.0.0
**E…
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Currently, the Tasks do not work when performed on an uploaded dataset. An exception occurs:
**Repository:** https://github.com/Rocsg/FijiRelax
**Branch with paper.md** (empty if default branch):
**Version:** v4.0.3
**Editor:** @britta-wstnr
*…
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### Brief Issue Summary
Hi,
One of the reasons I like Ninja is that, if there are no problems, compilation messages are overwritten on the same line so your terminal/output window does not get s…
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Transferred by @LaurenceJackson on Mar 26, 2021, 13:57
:::Issue recreated from Jira issue [HZN-104](https://gsttmri.atlassian.net/browse/HZN-104):::
Error received below when trying to run ghosting …