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Hello dynamo
I met a bug when using dyn.tl.dynamics
What should I do?
KeyError Traceback (most recent call last)
Input In [5], in ()
----> 1 dyn.tl.dynamics(ada…
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Hi, my data was obtained the conventional scRNA-seq technique (10X) with no labeling data. I found the nonsensical velocity flow from macrophage to monocyte using dynamo. I found your article called "…
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Hello,
I was reading your preprint and code, I had a question on whether the Cellrank based integration is truly an "early" integration method. Since RNA velocity transition is computed on the redu…
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Hi,
I was wondering how to merge different samples for the analysis with dynamo.
For a single sample, I am importing the loom file from the velocyto output:
```
adata = dyn.read_loom('velocyto…
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Hello @Xiaojieqiu,
Last week I run the scEU-seq tutorial script and I noticed that, without changing either virtual environment or input dataset, the cell cycle plot looked significant different wh…
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Hi Dr.Qiu,
I am recently analyzing scEU-seq data and conventional scRNA-seq data with dynamo, where I have found a huge batch effect between samples of different developmental stages or different l…
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Hello,
I find dynamo a great tool for single-cell analysis tool.
However, I found it hard to install this package because the network of my cluster is bad.
Is there possible provide a docker image …
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Hi,
I'm using Velocyto on data generated from 10x genomics cellranger pipeline, and project velocity onto embeddings produced from Seurat and scanpy. I found that some of my marker genes are barely…
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Found a bunch of repeated words, many of which appear to be erroneous (e.g. "An event is an an element"). I haven't checked all of them though.
Repeated token 'an' at:
discuss in Section 2.1.1.4…
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Hello, I am a little confused about how to compare these tools. It seems that their functionalities are pretty similar, while CellRank can also estimate cell fate or cell trajectory. However, cellRank…