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for the course, we've decided on jupyter notebooks (assuming it all works!). That will lead to duplication of demos and therefore bugs.
One solution might be to swap to jupyter notebooks and tell p…
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I built SIRF 3.7.0 with the branch https://github.com/SyneRBI/SIRF-SuperBuild/pull/897
Executing https://github.com/SyneRBI/Challenge24/blob/nema-data/src/SIRF_data_preparation/prepare_data.py it f…
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Example is at https://github.com/gschramm/SIRF-Exercises/blob/a581dc1e72d3cb1ff156ad88c2db770398a28c17/notebooks/Deep_Learning_listmode_PET/01_SIRF_listmode_recon.py#L176
It works fine for the "sin…
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The `prepare_data.py` script has harcoded 2 floats `start` and `stop` as 0 and 10 respectively.
https://github.com/SyneRBI/Challenge24/blob/7d7942e3fc30f3751d03f805f3d30463d68593b4/lib/sirf_exercis…
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## Release Checklist
```
VER=3.7.0
```
1. Submodules (within SIRF)
- [x] tag data
+ `git submodule update` # **should not complain**
+ `cd data && git tag -a v$VER -m "version $VE…
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The following code
https://github.com/TomographicImaging/CIL/blob/c133dc465ade1bcea5a8c0f597f426afe0b1b64a/Wrappers/Python/cil/optimisation/functions/KullbackLeibler.py#L456-L458
should be
``…
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I think https://github.com/SyneRBI/SIRF-Exercises/blob/7a97fdea85cd24dce6c9fd3169be194c76d447ee/notebooks/PET/Solution_Snippets/DIY_OSEM_01_MLEM.py#L1-L9
should be
```python
def MLEM(acquired_…
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https://github.com/SyneRBI/SIRF-Exercises/blob/33fae8f50c0403c58b5c22d152299e59704582ff/.devcontainer/devcontainer.json#L15
@casperdcl should this refer to `ghcr.io/synerbi/sirf:jupyter`?
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I have no idea which tags are available, and it seems ghcr.io doesn't have a search/list facility (or not an obvious one anyway).
The README mentions `jupyter` and `jupyter-gpu`, but there is more…
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I tried acquisition_model_mr_pet_ct.ipynb (on a new VM, so maybe there's something wrong with that). It fails.
```
preprocessed_data = mr.preprocess_acquisition_data(mr_acq)
```
gives
```
ignor…