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Hello,
Apologies if this is a silly question, but I am trying to figure out what to do about regions in my tcount files that have overlapping 3'UTR's associated with them. For example, part of my n…
os306 updated
7 months ago
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Hi,
I want to get a table of half-life per gene from the slamdunk results. And I found an R script under the git plot folder that looks appropriate.
slamdunk/plot/compute_halflifes.R
However, the…
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**Describe the bug**
Multiple links within SLAMSeq documentation produce Error 404 messages.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to [documentation page](https://nf-co.re/slam…
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Hello,
I am running into a problem with the count dunk. This is the error I get:
> Traceback (most recent call last):
File "/home/iyoh/slamdunk/bin/slamdunk", line 28, in
slamdunk.run()…
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Hi,
I'm running SLAM-DUNK in a Docker container that I've been using for some time. It's been running smoothly for the most part on some test data and I finally got my sequencing run back and starte…
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I ran ''slamdunk all' and then followed the instructions for the 'alleyoop utrrates' (the 'sanity check' part in the documentation). Looking at the PDF outputs, I found no conversions unfortunately.
…
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### Description of the bug
nf-core launch with --params-in /path/to/nf-params.json results in "Parameter output file already exists! nf-params.json". is this an error? my understanding is that it s…
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### Description of the bug
When selecting the web based launch method, I get the following error:
ERROR nf-core website API results response not recognised: https://nf-co.re/launch
See…
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I'm trying to run slamdunk on fastq files in a directory. I'm running it locally in an anaconda environment.
I'm getting an error about index files being missing from both the map and filter folde…
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Hi Tobias,
Two questions:
1. I guess that there is no option for paired-end alignment, and I should use other aligners and use their BAM files as SLAM-dunk input?
2. Can you explain the output of …