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Greetings from the Mehta Lab and apologies in advance for the long post!
I am attempting to use gunpowder as a dataloader for (float32) data in the ome-zarr format. I have run into a few issues try…
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Thanks for this amazing work. I am trying it on our WSIs. I got this warning "Slide magnifications 40 do not match expected target magnification". (This is interesting since original Hovernet expects …
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Hey guys,
I want to use this issue to give you a short overview of the work I did so far on the baseline-cnn.
After I found the tutorial + code (see the link in the README.md), my main goal was to g…
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LINCS contains 6 dose points: 0.04 µM, 0.12 µM, 0.37 µM, 1.11 µM, 3.33 µM, and 10 µM. For my experiments, I will use the highest dose (10 µM) as the training set and the validation set. The model is t…
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- Limb augmentation is wonky and requires you to reattach the dropped "fleshy" limb once you put the augment
- Augmented limbs cannot be healed with welders or coil ("It's in no need of repair!" bullc…
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It is now clear that this feature aggregation model will only serve a certain feature set (meaning a certain dataset line), and is not developed to be able to aggregate any feature set (it is only inv…
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### Official YOLOv7: Trainable bag-of-freebies sets new state-of-the-art for real-time object detectors
* **paper:** https://arxiv.org/abs/2207.02696
* **source code - Pytorch (use to reproduc…
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Label-free datasets acquired on the mantis have similar in-plane pixel size as hummingbird@63x, where a lot of the training data was acquired. To apply 2.5D virtual staining across microscopes, howeve…
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We should figure out an augmentation for placing stains on a document image, which generates the stains itself.
This probably looks like 2 new functions in `augraphy.augmentations.lib`:
1. a funct…
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