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**Submitting author:** @jjmccollum (Joey McCollum)
**Repository:** https://github.com/jjmccollum/teiphy
**Branch with paper.md** (empty if default branch):
**Version:** v0.1.3
**Editor:** @majensen
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When `R CMD check` is ran, it builds the rnw, tex and pdf of the manual (stemmatology-manual.pdf). Should we use this as base for the vignette ? Should we include it in the package tarball ?
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- Should we keep this function ?
- If yes, does it truly work ?
- If yes, document it !
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I wonder whether to switch from `sna` (+`network`) to `igraph` for network plotting
## Some reading:
- https://stackoverflow.com/questions/44578360/igraph-vs-sna-can-one-do-something-well-the-ot…
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The user should have the choice of whether e.g. spelling/orthographic variation gets counted as variation or not, when generating phylogenetic trees.
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Parsimony should also be an option for creating a stemma tree in the interface. It isn't provided by Stemweb, but we can do it ourselves with phylip...
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It should be possible to download the tradition in e.g. spreadsheet collation format, TEI parallel segmentation, SVG with or without relationships marked, etc. Proper nested parallel-seg is difficult,…