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As you can see from the log below - seems like GOTTCHA is throwing warnings about Use of uninitialized value $readcount ... etc etc etc.
This is just an FYI. I'm sure this is an easy fix, but it tak…
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Hello,
Hope someone still keeps an eye on issues here :-)
I am trying to install ReMatCh in an Ubuntu 20.02 in order to run the INNuca pipeline, but I cannot get through the installation.
See…
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Dear authors,
I am attempting to run quast on some metagenomic assemblies. It seems that quast is able to download some of the references, however it terminates after a certain point, even if I repea…
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:cool:
### :pushpin: Explain the Request
https://github.com/MDU-PHL/emmtyper
BLAST-based, uses assemblies
### :books: Context
### :chart_with_upwards_trend: Desired Behavior
…
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After World War II, antibiotics were considered "wonder drugs", since they were easy cures for what had been intractable ailments. To learn which drug worked most effectively for which bacterial infec…
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The _Listeria monocytogenes_ database on bacpop.org is missing the required graph file. I have only tested this for the reference database, as the full sample set was taking too long to download. The …
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Please provide as much information as you can:
* **Suggested term label:**
* **Definition (free text)**
* **Reference, in format PMID:#######**
(REQUIRED)
* **Gene product name and I…
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For the GO-PathGO alignment, we will
- [x] change the label of GO:0044542 'plasminogen activation in another organism' to GO:0044542 symbiont-mediated activation of host plasminogen
- [x] change …
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Greetings!
Thank you for working on this tool; it has been essential to download huge datasets fast.
I am trying to download all RefSeq genome assemblies for several bacterial species. To do that,…
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The landing page should list some statistics about bakrep, e.g. dataset count, count of unique taxa, dataset size. This can be extended once it is clear which stats are relevant or not. For the beginn…