-
```
Hi,
I'm having trouble configuring treemix-1.12. I've got GSL-1.16 and Boost-1.55.0
installed and when I run ./configure for treemix I get the following error:
checking for g++... g++
checking …
-
```
What steps will reproduce the problem?
1.Making the input format file (custom java script)that takes my vcf file, and
a file with the samples IDs and its corresponding populations and make the
…
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Hey
I contributed some years ago to a paper making a Nextflow pipeline for TreeMix. I don't give it support anymore and my git is just for the code availability of the paper, but it seems that many…
jbv2 updated
4 months ago
-
I've trying to use the polarize command but regardless of whether I pipe in the vcf or use the -i option, I always get the same error:
`polarize: error: the following arguments are required: comma…
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Hi there, do you have a work around for the R package BITE and it's dependancy on GENABEL? BITE is used in your R scripts so I was hoping you would have some tips on how to install it. I've tried mult…
-
Hi
Today when I was run a new data ,but it turns out like this ?
if I use original treemix， the error is gone？
I wonder know why？
file is in the attach ！
thankyou！
[pop.tmix.gz](https…
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Is there a way to convert vcf files to the format required for the GRoSS package? Thank you!
-
it shows: Program acf2treemix wrote 0 out of 5733 terminated gracefully
I used
glactools bplink2acf --fai refer.fai plink_prefix | glactools acf2treemix - | gzip >plink_prefix.gz
does the input …
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Hi,
I've been using glactools for a while now, with no issues, to manipulate files and export them to treemix format. Today I was working on a new sheep dataset and encountered a problem when settin…
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how to solve the problem "SD is zero for 1 or more runs! Check your analysis"