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### Description of the bug
I was running Sarek for about 100 samples, and I ran out of disk quota at some point. After free up more space on the cluster (Uppmax), I `-resume` the previous run, but I …
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## nf-core
nf-core produces pipelines with gold standard tools for various analyses.
- Workflow manager using `nextflow` language.
- Compatible with SLURM
- Uses Docker, Singularity and conda t…
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I/we enjoy references to the literature.
The [main git book](https://git-scm.com/book/en/v2) does not, however, help to answer the 'why' behind the practices we teach.
However, a search through…
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Currently, this page is called `bianca_workshop` (i.e. singular).
However, recently, it was decided to split the one Bianca workshop into two.
I suggest to
* either rename this repo to `bi…
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Dardel is a PDC system not an UPPMAX one. We have have to provide some Dardel-related documentation to assist migration, but I don't think Dardel should be in the menue with our own systems. Maybe hav…
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### Pipeline Scripts
- [ ] Process basics (input / output / script, channel types, output patterns, `tag`)
- [ ] Use of `params` (mention need for explicit defaults)
- [ ] Paired end inputs (`FromF…
ewels updated
7 years ago
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### Your suggestion
From a user at #109 :
> On a related note, while the setting up ssh key worked out nicely for me on Rackham, I was never been able to get it to work on Bianca following the Bia…
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Custom configs are now hosted centrally at `nf-core/configs`. We need to think about where we host the documentation for running these config files. These are currently added on a per-pipeline basis b…
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This course if part of NBIS. NBIS uses a standarized short-term evaluation form.
I suggest to consider using it.
Here it is as an attachment:
- [NBIS SHORTerm Feedback (STF) Survey informatio…
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Should all data be displayed in one table or in several ones?
Currently there are several datasets at https://export.uppmax.uu.se/snic2022-23-113/datasets/
Will there be one csv file for all metad…