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### Description of the bug
The job CUSTOM_DUMPSOFTWAREVERSIONS should process software versions from file collated_versions.yml. I believe this file collated_versions.yml is created in some previous …
aghr updated
4 months ago
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E.g. snic2022-6-145, is 1200 in plot but only 22 in list. Investigate.
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Construct databases using the same refseq data as the `kraken2` database which includes
- complete genome, chromosome, scaffold and contigs
- Archaea, Bacteria, viral, protozoa, fungi, plasmid…
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### Description of the bug
I am running Sarek using a custom reference and dbSNP version on a SLURM cluster. Each invocation of HaplotypeCaller produces a copy of dbSNP in the process's working direc…
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There is a button on the docs starting page but we need a link form more (all?) pages!
Two (?) ways:
- footer
- Björn tested but no solution (yet)
- top-menu
- easy, but can one have a …
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## Anvio-8 (CHECK LAST COMMENT FOR BEST INSTALL)
Anvio is not available as a module on Rackham and has to be manually installed in ones `conda` environment. The steps to install Anvio was gathered fr…
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Hi Peng,
I am trying to run the pipeline with the following command -
`CUDA_VISIBLE_DEVICES=0 nextflow run /crex/proj/snic2021-6-151/nobackup/Suvi/tools/ccsmethphase \
--dsname vv19 \
…
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