-
Software Heritage swh permanent identifiers, described at https://docs.softwareheritage.org/devel/swh-model/persistent-identifiers.html#interoperability , should be supported by WfExS-backend, as they…
-
I have this action integrated in one of my Python projects, so each time a push is done, it checks the licences of the needed Python packages. The list is obtained through `pip freeze`.
The point i…
-
Dear WfExS-Team,
I was testing WfExS on my local WSL2/Ubuntu.
Set up of core and further dependencies on a conda environment worked without any trouble.
Though during of the test workflow
`python…
-
Hi!
On Ubuntu LTS, with miniconda and Python 3.9.13, I cannot run `WfExS`. It fails with the following traceback:
```bash
(venv) kinow@ranma:~/Development/python/workspace/WfExS-backend$ python…
kinow updated
2 years ago
-
As we can see in [CWL Command Line Tool Description](https://www.commonwl.org/v1.0/CommandLineTool.html), several `CWL` workflows allow certain secondary files to be added alongside the primary files.…
-
In method starting at https://github.com/Acivico/WfExS-backend/blob/16bdcd01002cd2bbd7c10878576df4ca9fa54001/wfexs_backend/fetchers/s3.py#L13 the downloaded contents are saved to their own names, and …
-
Library [crypt4gh](https://pypi.org/project/crypt4gh/) can generate and use keys based on different algorithms. One of them is `scrypt`, which depends on very specific features from OpenSSL used to co…
-
Singularity is a daemon-less container platform very popular in HPC environments. One of its many features is mounting
FUSE filesystems before switching from host to container context, assuring thes…
-
There is an issue with workflow https://raw.githubusercontent.com/kids-first/kf-alignment-workflow/v2.7.3/workflows/kfdrc_alignment_wf.cwl , leading to error message
```
inputdeclarations.yaml:2:1…
-
## Expected Behavior
When singularity-ce is installed following instructions at https://sylabs.io/guides/3.8/user-guide/quick_start.html#download-singularityce-from-a-release) and cwltool is ran in…