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Hello, I ran into this error in my analysis while trying to create a seurat object.
```r
Error in slot(object = object, name = "cells")[[layer]]
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Hi, looking to move from ArchR to SnapATAC2. I'm mostly interested to know how, if at all, SnapATAC2 differs from ArchR at the peak calling step. I tried figuring this out myself via your tutorials an…
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Hello,
I am trying to export the peaks by cells accessibility matrix for external use, but when I use `getMatrixFromProject` the number of cells is much fewer than the number of cells in my ArchR …
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Hi,
Great packaged very helpful package! I was able to use the package successfully in November (with seurat v. 4.4.0).
But now when I try to re-run the code I get the error;
[1] "In Progress:"
…
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**Describe the bug**
`Error in FUN(X[[i]], ...) : cell_id not in colnames of 10X singlecell.csv file! Are you sure inut is correct?`
Cellranger-atac in version 2.0.0 has changed the format of their`…
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Hello,
When I run code below, I encounter some problem.
My code: `obj
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These would be nice use cases for rworkflows and increase the community more quickly.
### Our lab
- [x] https://github.com/neurogenomics/rworkflows
- [x] https://github.com/neurogenomics/template…
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@rootze @Sky970415
> seurat_atac
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Hello, I have met an issue about calling peaks from a fragments file, which has about 1.4 hundred millions lines of data. I left the calling progress running but after 8 hours it did not give any re…
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When using getMarkerFeatures, I am getting the following error message:
Error in cor(estbgdP, obsbgdP) : incompatible dimensions
In addition: Warning messages:
1: In rbind(estbgd, obsbgd) :
num…