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`atom.get_full_id()` returns a tuple of 5 elements and not 6 as stated in the docs/comments. In particular, atom name and alt loc are nested in another tuple.
For example, `a.get_full_id()` returns…
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Cross reference #898.
File ``Bio/motifs/meme.py`` copyright 2008 by Bartek Wilczynski (@barwil) was adapted from ``Bio/MEME/Parser.py`` copyright 2004 by Jason A. Hackney, checked in by Iddo Friedb…
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It would be awesome to be able to not only accept local files, but except Python data objects, for example stuff from [biopython](https://biopython.org/), i.e. a parsed GFF, or one of the `Sequence()`…
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Add support for stitching multi-contig input files:
- [x] Genome selection in UI
- [x] Integrate Mauve Contig Mover into Galaxy
- [x] Create stitcher tool
- [ ] Collapse multiple source annotati…
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Would there be any support for creating a Python module that creates template-BioSQL databases?
Is this technology too old? Or is there a better way to do this already?
If people are interested…
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As @peterc points out here: https://github.com/biopython/biopython/issues/374#issuecomment-59647618 the current regression test suite usefully checks for system (and intersystem) functionality (e.g. …
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I noticed that the bioconda pins are much more restrictive than the pins in setup.py
What's the reason for this? Can I relax the bioconda pins so that pathogen-embed doesn't constrain all the envir…
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Instead of using just cutoff frequencies like varThresh, what if quality scores could be incorporated into the collapsing to use actual probabilities to decide what the base in question actually is. B…
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```
pysam/libchtslib.c: In function '__Pyx_PyCFunction_FastCall':
pysam/libchtslib.c:15077:12: error: too many arguments to function '(PyObject * (*)(PyObject *, PyObject * const*, Py_ssize_…
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## Platform
- SeqAn version: 3.3.0
- Operating system:
> Linux bpb23-acc 5.4.0-136-generic #153-Ubuntu SMP Thu Nov 24 15:56:58 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
- Compiler: x86_…