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Hi,
I am trying to run aucell.
I use your docker image by singularity, but I got a EOF error.
pyscenic grn and pyescnic ctx did well.
command
```
singularity run aertslab-pyscenic-0.9.19.si…
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I'm using the pySCENIC pipeline and I noticed that some of the TFs I'm interested in are not present in the motif-to-TF annotation database (Column "gene_name", Human motif collection v9, downloaded f…
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https://mp.weixin.qq.com/s/i0Gv4h2b4goVzRSRJmkadw
ixxmu updated
3 years ago
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https://mp.weixin.qq.com/s/BToCCrU3J87iFbAuVQQNmg
ixxmu updated
2 years ago
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Dear developers,
I'm trying to run msVIPER on a DESeq2 dataset. With converting the dorothea regulons to a format suitable for msVIPER, I run into the problem that the output of the code below (tha…
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Dear team,
Thank you for this excellent package.
I am trying to use `run_viper` function with the dorothea regulons on two different datasets and look for overlap between the two datasets.
Fo…
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https://mp.weixin.qq.com/s/eAfkhX0SJu1lytZeXdsh0Q
ixxmu updated
3 years ago
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Dear team, sorry for bothering you, another question.
I used the pancreas object from "Integrate analysis of pancreatic islet scRNA-seq dataset". Everything is OK in that process.
However, running R…
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Hello,
I am having issues when attempting the function ```create_domino```.
When I run the function, I get the following error:
```
> pbmc_dom = create_domino(signaling_db = '/Users/melanie/…
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Thanks for your interesting tools.
I found some conflicts of gene symbol in the provided human regulons. For example, BHLHE40, and its previous HGNC symbols STRA13 / BHLHB2 can all be found in regulo…