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Using E-GEOD-59671 from ArrayExpress, the `magetab2isatab` does not succeed because the split on the SDRF table step does not work when Sample Name column missing.
The assumption about the splitti…
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Driving use cases of the MGED ontology \(MO\) is MAGE-TAB files.
MAGE-TAB format files are simple tab-delimited spreadsheet files \(SDRF file is one type of MAGE-TAB files\) used to describe a micr…
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Genetic Characteristics related MGED ontology \(MO\) terms are used to describe the characteristics of samples in a microarray experiment. To facilitate the terms to be added to OBI, we provide the us…
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All samples in a given SDRF file should reference the same adf file.
Change/update all SDRF files for 27k platform.
```
Original issue reported on code.google.com by `dmagli...@gmail.com` on 7 S…
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Current ADF is v2, while SDRFreferences "1". Modify and upload to DCC.
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Original issue reported on code.google.com by `dmagli...@gmail.com` on 8 Sep 2011 at 8:08
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Incorrect SDRF file referenced in IDF file of magetab for the following:
BRCA, GBM, OV, UCEC
Remnant from rapid.pro
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Original issue reported on code.google.com by `dmagli...@gmail.com` on 1…
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Added all samples (tumor, normals and control).
Need to:
- Name packages appropriately
- Name magetab files appropriately
- Add samples to sdrf file in magetab
- tar and md5
```
Original…
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```
Added all samples (tumor, normals and control).
Need to:
- Name packages appropriately
- Name magetab files appropriately
- Add samples to sdrf file in magetab
- tar and md5
```
Original…
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```
READ originally packaged with COAD samples and then later split off into batch
42. Add notation to description files indicating reassignment (level 1, 2, 3
and SDRF) and reupload. Required for T…
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Required:
Determine method for calculation of level 1,2,3 data for 450k platform. These
calculations should work in parallel to the 27k platform. Be as modular as
possible. My suggestion is to …