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Hi Ryan,
I am working on chicken scATAC data.
I used the GTF file and the FASTA file provided by Ensemble to build custom BSgenome and TXDB following the archR steps separately.All these processe…
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Hi,
I'm having issues integrating scRNA and ArchR data running addGeneIntegrationMatrix(). I've been struggling with running this step with my own data for the last week and after much failed troub…
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Hello,
saveArchRProject throws an error after adding following peak annotation to the ArchR object:
`proj
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Hello!
Thanks for this package!
I have run CellSpace using default parameters following your tutorial on the github page. Unfortunately when i then plot the results the umap only shows too large c…
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Hello,
Is it possible to use TOBIAS without BAM files?
Briefly, I am looking to compare footprints between two pseudo bulk replicates derived from 10X scATAC where I have Cell Ranger ATAC fragme…
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Hi there,
Thanks for your help so far! I'm wondering about the future of anndata-rs as anndata is continuously changing, especially through integration with RAPIDS. (https://anndata.readthedocs.io/…
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### Check duplicate issues.
- [X] Checked for duplicates
### Description
When trying to build ROOT on Arch Linux RISC-V, the compile result always segfaults and is unable to perform any tasks.
###…
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Although I don’t have any RNA-seq data to utilize in Seurat, I was hoping that I could import my scATAC-seq data from Cellranger-ATAC into Seurat to test quality control metrics and clustering. When a…
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https://mp.weixin.qq.com/s/53mX55v8qYpbUMhBobLCPQ
ixxmu updated
10 months ago
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hi~
I encountered the following error while performing archR analysis on my data. Initially, I thought it was due to an object information error caused by my sampling. However, when I attempted to vi…