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If I give an `XMLInternalDocument`object as input x,
the `nexml_read(x)` will raise:
Error in as.vector(x, "character") :
cannot coerce type 'externalptr' to vector of type 'character'
This is bec…
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Perhaps there is an easy way in the API already - how does one get at the the taxon IDs as annotated, for example, in the form of dwc:taxonID metadata? Like here in the NeXML produced by the Phenoscap…
hlapp updated
8 years ago
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NeXML as a format can contain multiple characters and otus blocks, and identifiers are used to tie them together. As per the brief conference call, there is currently no way to obtain the otus referen…
hlapp updated
8 years ago
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The NeXML generated by the API (for example the OntoTrace service) necessarily makes extensive use of the NeXML schema, but rather than defining the namespace once at the root element it defines for e…
hlapp updated
8 years ago
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Hi @jeetsukumaran and @mtholder!
I have recently expanded the analysis by Czech and Stamatakis regarding the [incorrect mapping of support values after tree rooting](http://biorxiv.org/content/early/2…
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The following call results in an error since #133 has been merged:
``` R
> get_metadata(nex, level="char")
Error in slot(node, element) :
no slot of name "char" for this object of class "nexml"
``…
hlapp updated
8 years ago
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The NeXML generated by OntoTrace includes elements such as the following:
``` xml
```
Note the hash (`#`) preceding the HTTP URI in the `about` attribute. Is this intentional, and why is it needed?…
hlapp updated
8 years ago
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@blackrim: The Bibliographic References page on devtree is broken, i.e., no list appears. This is because we're now getting a mix of prefixed and bare (numeric) study ids from the API methods used to …
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```
checking tests ... ERROR
Running the tests in ‘tests/test-all.R’ failed.
Last 13 lines of output:
Retrieving data for taxon 'Myotis_nigricans'
Retrieving data for taxon 'Myotis_sodalis'
t…
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I tried loading the TimeTree 50K taxon newick tree from http://www.timetree.org/book into study ot_409 (which currently has just the bird part). I got this error:
Sorry, there was an error importing…