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Hi all,
I can't find which methods are available in pyOpenMS to extract MS1 XIC from mzML files. I know there is OpenSWATHChromatogramExtractor in OpenMS but it seems like it's not available in pyO…
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Please see the usage description for parameter `-algorithm`.
As it stands, the description is truncated and only two acceptable options are shown ('average' and 'ranks').
See the issue in one cl…
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There are a couple of libraries that implement the zlib API, e.g. [madler's zlib](https://github.com/madler/zlib/), [zlib-ng](https://github.com/zlib-ng/zlib-ng), [QATzip](https://github.com/intel/QAT…
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`getPeptideResults` isn't accessible from `PeptideAndProteinQuant`, but it seems like a public method.
```
from pyopenms import PeptideAndProteinQuant
PeptideAndProteinQuant().getPeptideResults()…
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this would simplify some workflows e.g.,
![image](https://user-images.githubusercontent.com/5803621/132198041-71572654-0b74-424c-8607-7da136cbdd2d.png)
currently we need to branch and have the two w…
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I used IDFileConverter to convert a pepXML to a pepXML. I did this to get some search hits sorted.
Comparing the output of IDFileConverter with the original yields differences:
- only the first hi…
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If we zoom in on a mass trace or feature it magically disappears. Instead every feature that overlaps the visible area should be painted.
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Have used MSconvert (with peak picking) to export my data measured on VION-IMS-QTOF (coupled with LC) out from UNIFI.
The converted file (.mzML) have there after been opened in different softwares to…
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Could you please provide a method to get type of spectra in pyopenms when the information is stored in the mzXML at the same level as msLevel:
I see that there is a method in C
SpectrumSettings::…