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```sql
select CATEGORY_URI, GROUP_CONCAT(distinct CATEGORY)
from CHARACTERISTIC
where CATEGORY_URI is not null
group by CATEGORY_URI
having count(distinct CATEGORY) > 1;
```
```sql
select VA…
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Is also present in an
U3 snoRNP-associated protein
structural constituent of ribosome should be removed.
possiblyribosome although this may be OK ?
Reported by: ValWood
Original Ticket: "geneonto…
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Is probably too granular?
I.e there are proteins which appear to be involved in
rRNA metabolism (well ribosome organization?)
not sure...
val
Reported by: ValWood
Original Ticket: "geneontology/a…
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Hi!
I am having difficulties running RiboTIE. Firts of all, after installing transcript_transformer I tried to run ribotie -h and got "-bash: ribotie: command not found", but I noticed that I can use…
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## Describe the issue
Hello,
I'm facing two issues about consequences reported by VEP for two variants.
Stop_gained is not reported for both while the mutation leads to a shortened transcript.
I…
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### Issue type
Build/Install
### TomoBEAR source
source code (via interactive MATLAB session), standalone binary (using MATLAB libraries)
### TomoBEAR version
v0.5.0
### Computing system
HPC cl…
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The annotation of this doesn't make much sense int eh
context of the function of the proteins which contain
this domain (they are involved in ribosome biogenesis
and export). I think I have mention…
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Hello,
I think the component mappins of ribosomal proteins
could be made more precise, for example "IPR000876
Ribosomal protein S4E" could be mapped to GO:15935
(small ribosomal subunit) rather than…
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When a set of subtomograms are aligned with emantomo, the alignment is not stored in the sqlite.
To reproduce this behaviour you can follow the next steps:
A set of subtomograms are aligned with…
Vilax updated
8 months ago
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Hi @picciama
I'm using Oktoberfest to generate a prosit library using a semi tryptic library of uniprot proteome. Here is the output including the error.
2024-02-06 08:43:03,224 - INFO - oktobe…