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The rules for which files go in "anatomicals" vs. "surface" vs. "cache" seem arbitrary. Especially the distinction between "cache" and "anatomicals", both of which contain items that are generated on-…
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My colleague Mohammad and I found that we get a better segmentation (and thickness measure) by combining FreeSurfer (FS) and ANTs (Atropos) outputs (see below and the new functions combine_whites_over…
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i put mindboggle turtle terms in a wiki, but all of the indentation disappeared, so i am including mbterms.ttl here. in addition to some basic terms at the beginning, i include all of the (cortical) …
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Arno Klein, Forrest Bao, and Martin Reuter
Arno (5/31/2013):
can you run the lbo code on disconnected patched? if not, let's simply choose the largest patch.
Forrest (5/31/2013):
Yes, I run LBO code…
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and parts of it running only for wm mask correction / inspection:
it is at the end of the step2 that you need to check and corrected if needed the wm.mgz (white matter volume) and and relaunched the …