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Hello!
Here is an issue I have recently encountered: the python version was incompatible with the `networkx` package.
```
Traceback (most recent call last):
File "/project/_app/Lace/Lace/Lace_ru…
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```
What steps will reproduce the problem?
1. using sparse matrix available at
https://raw.github.com/gist/3422269/e0a585749a3a9ae84003fc368e80b69398a30d22/gis
tfile1.txt
2. ./bin/als training lsa_t…
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```
What steps will reproduce the problem?
1. using sparse matrix available at
https://raw.github.com/gist/3422269/e0a585749a3a9ae84003fc368e80b69398a30d22/gis
tfile1.txt
2. ./bin/als training lsa_t…
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[ClipKIT](https://github.com/JLSteenwyk/ClipKIT) is a new MSA-trimming Python package. The authors indicate the trimmed MSAs generated by ClipKIT are more "desireable" (combined RF distance and bipart…
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Seria bem legal incluir mais uma função ou script simples para fechar este pacote. Ou seja, algo que permitisse ao usuário já calcular a significância da métrica de interesse por Monte Carlo, com base…
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I have got a question regarding GEXF files generated from TCAT.
When a GEXF file is generated from TCAT (i.e. Bipartite hashtag - user graph) the XML version and XMLNS are not compliant with the G…
arber updated
4 years ago
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NumPY-1.24.0 got released in late December, and Debian's psi4 (still based on 1.3 due to LibInt) now fails (most of) the testsuite like this:
```
133/143 Test #406: python-curve ..................…
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I have to compute a lot of hungarian matchings between sets of points using their distance as the matching criterion. So far I have tried this hybrid Scipy (CPU) and PyTorch method:
```
import numpy …
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Hello,
I would like to test PHAIL on a database of ~ 1000 loci and 66 taxa. Iam running it on an HPC but it take a very long time and go above of the time limit. So I think I can use the restart mo…
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**Describe the bug**
`power_centrality()` cannot handle weighted graphs and so returns different values for a weighted graph and for an equivalent graph with parallel edges.
`sna::bonpow()`, on…