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Hello, thanks for the amazing code!
I'm working with a large pandas dataframe containing organometallic molecules in the **.mol V3000** format. RDKit can read it perfectly but as I can see ChemML, us…
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INDRA internally uses CHEBI IDs, MESH IDs and GO IDs for chemicals and processes, respectively. However, BEL Statements provide these IDs in the form of string names. There are resource files defining…
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Exception has occurred: AttributeError
module 'pybel' has no attribute 'readfile'
ghost updated
5 years ago
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C:\Users\15020>python -m blender_chemicals.run c1ccccc1
Traceback (most recent call las…
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I want to create a dictionary containing all aromatic rings and their atoms of all ligands from sdf file and then calculate each aromatic ring’s vector normal to it's plane using numpy module.
I c…
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Installation: **`pip install git+https://github.com/SmartDataAnalytics/BioKEEN.git`**
Command: **`biokeen start`**
**`pip freeze`**: [requirements.txt](https://github.com/SmartDataAnalytics/BioKEEN…
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I'm not sure about OBO, but for PyBEL, it would be possible to read the current `famplex.belns` file, compare it against the current contents, and fail if they're different (indicating that we forgot …
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I recently ran into an issue where we thought that having packages that depend on libgcc and libgcc-ng caused problems (see conda issue [here](https://github.com/conda/conda/issues/8844)). We were tol…
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After executing `biokeen start`and selecting KEGG as DB, I got following exception:
> Traceback (most recent call last):
File "/Users/mehdi/virtual_envs/BioKEEN/bin/biokeen", line 11, in
l…
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```
$ pip install git+https://github.com/pybel/pybel.git
Collecting git+https://github.com/pybel/pybel.git
Cloning https://github.com/pybel/pybel.git to /tmp/pip-K0NTFq-build
pybel requires Pyth…