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Hi,
1. Create a 'GGbio' object with autoplot and a ggplot2 geom.
2. Create a track with identical copies of (1).
Then, the first panel is always smaller than all panels below this (works for any numb…
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We should have an option to add more repositories other than CRAN when checking for dependencies. Specially Bioconductor. See ?setRepositories.
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This is because of an error in ggbio::plotIdeogram() in R 3.0.2
Check https://github.com/tengfei/ggbio/issues/45 for more information
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Autoplot error described at https://github.com/tengfei/ggbio/issues/47
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I am encountering an error when using ggbio::plotIdeogram() on R 3.0.2 that I think is related to changes in R. The error can also be seen in http://www.bioconductor.org/packages/release/bioc/vignette…
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Hello again Tengfei and BioC list,
I am encountering a new error when using autoplot() on a GRanges and an
annotation data base.
I suspect that there is no annotation on the region I selected. For n…
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Hello,
I'm not sure whether to ask this here or at https://github.com/rstudio/rmarkdown. Anyhow, using `rmarkdown` and `knitrBootstrap` I generated an HTML file that includes among other things aroun…
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Saving plots arranged with tracks() to a PDF file will put an empty page before the page containing the plot. Is there anything I can do to avoid this?
Simple test case:
``` pdf('test.pdf')
## make …
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Hi,
When having an autoplot of a readGappedAlignment object with a color scale having manually set limits, having the plot as a track does not work anymore:
```
rga = readGappedAlignments(bam_path, …
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Hi,
thanks for this pretty cool initiative: using ggplot (which is near to a new version release, with much improved functionalities) for genomics is a great idea.
I was wondering if you're planning o…
ghost updated
12 years ago