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---
id: neuron
version: 8.0.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_pyNeuroML/773ee76d0b186b0e166dcda905376f14f8277ff0/biosimulators-neuron.json
specific…
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---
id: pyneuroml
version: 0.5.11
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_pyNeuroML/773ee76d0b186b0e166dcda905376f14f8277ff0/biosimulators-pyneuroml.json
s…
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---
id: copasi
version: 4.34.251
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_COPASI/9be4d2078b845f0cdb89e87da43d1058ab773b1a/biosimulators.json
specificationsPatch…
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---
id: opencor
version: "2021-07-09"
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_OpenCOR/4cd35b9d556aaa4cd5d8e32439762ff5be836d8f/biosimulators.json
specifica…
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cf https://github.com/fbergmann/libSEDML/issues/88: empty 'value' strings are treated by libsedml as unset, as has been the common practice in libsbml and other systems biology libraries for yonks.
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Chris Myers was under the impression that setting 'reset=true' on a repeated task would require resetting the random number seed for the simulation. I would have thought that the random number seed w…
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---
id: gillespy2
version: 1.6.2
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_GillesPy2/aedf675b55a460d07ae12769b18a7f207b941c0a/biosimulators.json
specificationsPa…
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OpenCOR appears to have a strange behavior where repeated calls to `opencor.open_simulation` return the same result, rather than reading the current state of the requested file.
In the first exampl…
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---
id: pysces
version: 0.9.9
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_PySCeS/ff000167b412c857fff3ee2ba669202fed8918d3/biosimulators.json
specificationsPatch:
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# Topic
This proposal covers logical models.
# Proposal
A proposal draft for SEDML to cover models encoded in SBML Qual was written up:
This is available at
https://github.com/SED-ML/sed-ml/…