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Hi everybody! I'm having an issue with saving my graph objects to disk, in which the graph objects are taking up large amounts of disk space regardless of whether or not I have node or edge metadata a…
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# Why APBS and PDB2PQR?
An understanding of electrostatic interactions is essential for the study of biomolecular processes. The structures of proteins and other biopolymers are being determined at a…
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Hi
For ftp protocol at leste there is a problem when getting the date of a file. A file with date 10/06/2015 for exemple leads to a release of 2015-6-10. I think it should be 2015-06-10.
Thanks
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Since the pull request #314 the `ReducedChemCompProvider` is the default behaviour. This generated some problems in parsing structures with modified aminoacids, because they are stored in `Hetatom` ob…
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When I set `allow-plugins` to true, I'm unable to view pdf files with pdfjs, but if I set `allow-plugins` to false, everything seems to be working fine. I set up pdfjs manually under debian, and turn…
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Example: PDB ID 102L
- SEQRES record contains 165 residues
- ATOM record contains 163 residues
Chain c = ...
String sequence = c.getSeqResSequence()
returns 163, instead of 165 residues.
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The current PDBParser supports parsing SEQRES records from a PDB file header; however, the MMCIFParser does not yet support parsing sequence information from a mmCIF file.
The current implementation …
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In the search results, when looking at the overall results (e.g. Step 1 - search for 'cell line' and consider the page with the search results), the facets appear in the order:
- data types (Show resu…
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## Question 1
The version of `mpiblast` that is on RCC is not compatible with the `nr` database. Apparently, `mpiblast` is not very popular and hasn't been recompiled in a while. I have created an …
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In determining the **RotationGroup** of an assembly permutations of all the subunits are generated by combining existing valid permutations. The maximum number of permutations is the factorial of the …