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**Bug reports that do not sufficiently describe a bug are not helpful and will most likely be ignored.**
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I know, working on it.
I found a bug with Merge Data, but I can't reproduce it for now…
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Gene set will be grouped by positive versus negative genes and will be sorted here.
![image](https://user-images.githubusercontent.com/751274/69672418-eee89400-104c-11ea-83f6-58b1c8f68235.png)
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Hello @bramvds ,
Since all regulons targeting fewer than 20 genes are dropped (in the modules_from_adjacencies function, why I got regulons with fewer than 20 genes?
![image](https://user-images.g…
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**Describe the bug**
Hi, I got a ValueError when runninig "pyscenic ctx". I follow the Nature Protocol and download the ranking database in feather format. The list of TF I used is SCENICprotocol/exa…
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Hi scanpy team,
I am having trouble reading in a loom file using `read_loom`. I started a jupyter lab session in a conda environment and tried to read in a loom file from http://scope.aertslab.org/#/…
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I have a scRNA-Seq dataset composed of 33k cells of which roughly half of the cells come from Case samples (samples having a specific disease genotype) and the other half come from healthy Controls.
…
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**Describe the bug**
A clear and concise description of what the bug is.
Hi I am trying to binarise AUCell for further analysis.
I am currently following codes in SCENICprotocol.
I could succe…
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Hi,
I have a quick question,
So in this step, I use the tutorial code to write down the regulon file to "regulon.p"
But it might be a better idea to output it to gmt file so that it can be importe…
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I'm trying to run the PBMC tutorial Jupyter notebook (PBMC10k_SCENIC-protocol-CLI.ipynb).
It's taking some time to run `pyscenic ctx`. Right now it's been two days and it's still running. I'm runn…
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Hello, Florian
I can use kmeans_thresholds to finsh the pipeline you provided, but I'm not sure if it is appropriate for my data. You mentioned that auc_thresh_kmeans function might not perform ve…