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This is a far reaching change that I would be rather conservative about. I'm happy to probe the community but maybe the ability to change the global configuration to include infinity is enough?
@op…
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This issue extends from https://github.com/SBRG/bigg_models/issues/333.
In models like [iAT_PLT_636](https://github.com/SBRG/bigg_models_data/blob/master/models/iAT_PLT_636.xml), an objective is pr…
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Two parts of the design based on three sources,
- [x] Different levels of detail: https://www.overleaf.com/project/6694e85334c12d8cf2cc24d5https://www.overleaf.com/project/6694e85334c12d8cf2cc24d5
…
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#### Problem description
> I don't believe this framework is general enough to be appropriate for the wide range of modeling tools that the community will develop. For example, Pathway Tools uses a…
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This is a spin of from #6, concerning only the SBML COBRA ID conversion.
Current status is two options:
A: Define a clear conversion scheme between COBRA-ID and SBML ID
B: Add the `fbc` label as a…
tpfau updated
6 years ago
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Trying to prevent cobra from prefixing my identifiers when writing SBML, I got this (using the textbook model, model history error is unrelated):
`cobra.io.write_sbml_model(model, 'test.xml', f_rep…
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So that [any of these editors can be used with Nerdamer.](https://github.com/mathjax/MathJax-docs/wiki/List-of-web-based-math-editors)
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Hi,
Very fascinating and exciting work! :)
This issue is mainly about the implementation of AGF across different versions of BANKSY. In the R version, AGF (also called 1-Harmonics) is computed a…
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Thank you for your contributions. I want to evaluate using PMC clip, but despite referring to existing solutions for model config errors, I still encounter errors. Fusion-related models do not appear …
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In GitLab by @mcoleman on Jun 20, 2023, 15:29
## Summary
At present, PROCESS exclusively uses an empirical fit for $`l_i`$, found in e.g. ("Tokamaks" 4th Edition, Wesson, page 116), and ("Fusion" 2n…