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I have some NA returned from the function TFEA.ChIP::Select_genes()
I ignore them using the following:
`Genes.Upreg
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To get going with my JOSS review, I just installed GiNaCDE. While the installation itself went smoothly, running `ctest` led to a segfault for the first test (the second one passed):
```
➜ crstnb…
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Hello,
I would like to use the data from the excellent Lovric et la. 2022 paper to help computationally call cells types in a similar experiment in mice. I found the cellranger filtered output on G…
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**Describe the bug**
I stored my custom FHIR profile, and even though it stores the profile properly, it is unable to create and validate new resource properly.
**FHIR Version?**
Stu3/R4/R5
Stu3…
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Hi,
Thank you for reading my issue
I was wondering if it is possible to acquire the peak genes (up-regulated genes) for only one section?
and could the results of `findPeakGene` be considered a…
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Dear splatter developers,
Thank you very much for your software, which I think is extremely useful for the development of single cell methods.
I am trying to simulate a dataset with a particular d…
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Hi,
I want to use Stringtie for transcriptome assembly. I have 33 samples (3 for each condition) and the pipeline used is:
HISAT2 2.0.5 with the commande line:
hisat2 -p 2 --no-softclip -q --rn…
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**Describe the bug**
I am trying to validate a profile using hapi-fhir-validation version 6.1.3 wherin one of the elements contains a reference of type "canonical" and the targetProfile containing th…
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Hi, thanks for the wonderful workflow. I am normally using leafcutter for junction analysis but this package complements really well.
I just wanted to ask if the junction count should be normalized…
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Hello. I believe ChromDiff is still recommended for finding out regions with differential chromatin state and linking it with different expression.
I'd like to give it a try, but I have not been able…