-
I can not get the Expectation interface (over sensitivity states) of the Lotka Volterra model to match up with my own naive implementation:
```jl
using DiffEqSensitivity
using ForwardDiff
using D…
-
The following example simulation runs did not succeed:
Budding yeast cell cycle (Irons, J Theor Biol, 2009; SBML-qual; BoolNet; synchronous) (615b567970c4195fe6b44eb5)
"Cannot GET /runs/615b567970c41…
-
---
id: smoldyn
version: "2.67.2"
specificationsUrl: https://raw.githubusercontent.com/ssandrews/Smoldyn/0bedd3851cf8bd384759f99a0bbb8b57b687a814/biosimulators.json
specificationsPatch:
version: "2.…
-
---
id: amici
version: 0.11.20
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_AMICI/d668cb6544e871157919ac2e4e0dd35764dae0bc/biosimulators.json
specificationsPatch:
…
-
---
id: smoldyn
version: "2.67.1"
specificationsUrl: https://raw.githubusercontent.com/ssandrews/Smoldyn/17132756daadaf48906191be21eda99334d51197/biosimulators.json
specificationsPatch:
version: "2.…
-
---
id: opencor
version: "2021-10-05"
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_OpenCOR/e00645e372baf7475957af9487856ad9ddd18814/biosimulators.json
specification…
-
DifferentialEquations.jl and DiffEqFlux.jl have the function interface:
```julia
function f!(du, u, p, t) ... end
```
When using DifferentialEquations.jl, `p` can be anything, especially any typ…
-
---
id: rbapy
version: "1.0.2"
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_RBApy/d4b58f667cdc9f7e6b9fec36c1f2b9b111a20beb/biosimulators.json
specificationsPatch:
…
-
I'm really committed to use Julia for my future projects, but my learning curve has stalled for 3 days now because of this.
I was trying to implement a piece of code showcased live at Juliacon20 wh…
-
I get identical dynamics when I run a `GillespieSSA2` model twice in a row. I can't find any discussion of random seeds (setting/resetting/etc.) in the package/repository, despite the fact that `set.s…