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This pipeline will prepare data for training. Notably:
- Segment the spinal cord to extract ROI for cropping
- Pros: Smaller input volume for training keeping only the spinal cord region in focu…
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### Motivation for the feature
The current documentation is not "complete" when it comes to the option of training with soft segmentations. Currently, the key "soft_gt" just says that setting i…
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In the readme of this new repository, redirect to this repos to get details of preprocessing, etc.
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We initially called `sct_deepseg_sc` with `-brain 1 -centerline cnn` to speed up segmentation. However, a total of four subjects failed: `sub-P004, sub-P011, sub-P006, sub-P017`. In PR #7 with commit …
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Compare the following folders:
- https://github.com/spinalcordtoolbox/spinalcordtoolbox/tree/release/dev
- https://github.com/spinalcordtoolbox/spinalcordtoolbox/tree/master/dev
The master bran…
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There are two levels of signal datasets in Brainstorm:
1. Link to raw signals
2. Trials
The first one, as the name suggests, is just a link to the raw file that is created by the acquisition syst…
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Pytorch 1.7 was just released. It could be a good idea to update our requirements to use this new version.
From a development perspective, this would allow us to use CUDA 11, which could reduce the …
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### Motivation for the feature
Currently, several dependencies are preventing Torch, Python upgrade to more recent versions. The sooner we identify and resolve and become aware of their issues …
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From tutorial [here](https://ivadomed.org/en/latest/tutorials/uncertainty.html), the trained model is expected to be in this path:
```
"path_output": "/data_example_spinegeneric/trained_model"
``…
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## Issue description
I got an error while running the tutorial [Cascaded architecture](https://ivadomed.org/en/latest/tutorials/cascaded_architecture.html#cascaded-architecture).
It seems to be re…