-
Hello,
It looks like the latest mixcr release, 3.0.3, is no longer parseable by tcR. The clonotype counts were previously an integer, but are now a float and this is producing an error.
Error i…
-
My `make dep` is failing while fetching some sourceforge packages. I'll put an excerpt of my terminal below, perhaps you might see something useful (sorry for the french, but the penultimate line says…
-
Hi, thanks for sharing your package!
I found an error when parsing Immunoseq files. The header doesn't match my files, so I had to fix it by changing:
```
reads
-
V/D/J segment name fixes for immunoSEQ parsers won't work correctly even if the parsers were working. Example: V20-1 is left as V20-1 even though tcR uses V20 for gene usage analysis.
-
Do you have plans to add a test to identify sequences that are differentially abundant between two samples? Such as for expansion of clones after some stimulation or other intervention?
There is a me…
-
Hello
I am trying to parse many mixcr files using tcR package but along the way I get this error:
Error in `$
-
Using the value of 1 results in 5 decimal digits, using 0 results in 1.
```
vis.heatmap(twb.shared, .title = "morisita index",
.labs = c("Sample in x", "Sample in y"), .legend = "…
-
Hi,
I try to import the example dataset download (MZTwins) from http://labcfg.ibch.ru/tcr.html. It showns the following error. Could someone help me?
Thanks.
![image](https://user-images.gith…
-
Hello
I just noticed a strange absence in the set of V gene segments (the HUMAN_TRBV vector): it seems that the TRBV6-8 and TRBV6-9
( two gene segments coding those specific T-cell receptor bet…
-
Hi,
we found inconsistent annotation of gene names between MiXCR outputs and tcR. For example, one segment in the V region is named as "TRAV38-2DV8" in our MiXCR output. We counted the number of clon…