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Computing fixel apparent fibre density (FD) and fixel correspondence in the current fixel-based analysis (FBA) pipeline is performed by:
1. warp FOD to template with FOD reorientation and optional mod…
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So FODs are not the only type of intra-voxel orientation information that one may wish to display. Some possibiliities:
- FODs
- Tensors
- Output from SH2peaks / FSL (i.e. set of XYZ vectors per voxel…
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Server: Debian Wheezy
PHP Version 5.4.45-0+deb7u3
Apache-npm-itk v2.2.22
libapache2-mod-security2: v2.8.0-2~bpo70+1
Modsec Crs: v3.0.0-rc1
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It's very strange.
Modsec seems to works fine. I have p…
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With respect to this community post: http://community.mrtrix.org/t/msmt-csd-wholebrain-tracking-not-enough-streamlines/215
...and more and more people actually lowering the default 0.1 FOD amplitude …
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OpenDocument Format (ODF) is fully Open Source standard based on XML, so you can find everything on Google.
The most commonly used files start with OD and then a letter that tells what file it is. Th…
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Just to add to all the fun you've been having with volume render clip planes...
I've seen in other softwares where you essentially take a slice through the image volume at any angle, and from an off-…
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The actual multi-shell dwi2fod version now works, as far as I can tell, and is probably ready to be integrated into the master branch. What is still needed are the tools supporting it, in particular t…
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Exports to `.ods` from Google Sheets seem to have random style changes each time, causing this script to create tons of needless commits. This should be accounted for.
Here's a diff between two commi…
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QA
- The new sidebar menu developed from oc8.2
- Testplan available on: https://s3.owncloud.com/owncloud/index.php/s/V97rqyM2AxElTBY
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Hi, I was trying to run the HCP demostration as outlined here: https://github.com/MRtrix3/mrtrix3/wiki/ISMRM2015-HCP-demonstration
Everything worked until the connectome generation.
tckgen output:
t…