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I believe that support for this was added for mapping between `PeakMap` and `PeptideIdentification` in this PR: https://github.com/OpenMS/OpenMS/pull/5120. Is it possible to also support mapping by na…
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Example visualization (generated in Matlab)
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Hi,
I have been testing the current SpectraST 5.0 Linux 64bit executable from the OpenMS thirdparty repository and found some problems.
1) There seems to be some kind of numeric problem since Sp…
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Hi all,
we have a request from @michaelwitting for the support of `EAD` as a value for `AC$MASS_SPECTROMETRY: 'FRAGMENTATION_MODE`. I would like to use this opportunity to push the usage of controlle…
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Hi,
I have tried to use the skyline to export the DDA library.And the library is produced by proteome discoverer(.pdresult).
And I export the .tsv filea ccording to the instructions discribed here.
…
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The ProteomicsLFQ documentation should be improved (especially since it's now being used in nf-core workflows). See current state here: https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Do…
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Every single time users are confused how to use the correct scores when doing non-standard workflows:
- [ ] Fido needs to do autoscore switching like all other inference tools
- [ ] FDR and IDFilt…
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I found a lot of traces of a target called doc_internal. It seems like it was removed at some point. We should remove these traces. It avoids confusion for new maintainers and gets rid of warnings.
E…
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Hey, is there a specific reason for `IntensityType` to be a `float` in `Peak1D` and `Peak2D`, but `double` in `ChromatogramPeak`?
I noticed this while writing a templated method that works on both `M…