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It would be kind of nice if you could view (and select from) a list of top ranking scenic regulons.
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**Description**
As a member of the HCA Metadata&Wrangler team who is responsible for accurate data and metadata presented on the Data Portal for the data consumers, I would like to update all sampl…
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Continues from https://github.com/aertslab/SCope/issues/62
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Hi,
I get the following error message when I use the function **prune2df**:
AssertionError Traceback (most recent call last)
in
3 # Calculate a list of enric…
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I have been working through the pySCENIC tutorial locally with an in-house dataset. All seems well, thus far. When I get to the AUCell / Phase III step, however, I get the following error trace:
``…
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Hi,
I have a few doubts regarding the output. I really appreciate your help on these.
Thanks in advance!
1) If I derive AUCELL matrix for an expression matrix of n cells, Can I still use the sa…
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Hi,
How come that some regulons do have an empty entry for `motifData`?
![image](https://user-images.githubusercontent.com/16015936/56134890-cca77780-5f8f-11e9-9b11-e5fab5f18a89.png)
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Hi @bramvds,
I found an extreme case where binarization fails. In my case I had 1 regulon with 1 gene which raised the following error:
```
TypeError Traceback (mo…
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Greetings, I have run this package successfully on some of my datasets in the past, but I am rerunning it with pyscenic v0.9.9 (python 3.7) now and I am having an issue where the modules = list(module…
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Hello,
I am running the command line implementation of pySCENIC on a Mac. The GRN step works just fine. When I do the ctx step, using a CSV adjacency file as input, I get an error when I try to sa…