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https://github.com/imminfo/tcr/blob/96c36080237f3c3087147dbcd37223414fcc506e/R/plots.R#L603
Think there's a typo, _group_ rather than _Group_ as an aesthetic. But changing that means that each gro…
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Hi,
I'm using parse.folder as follows:
MT
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Hey, I was using your cosine.similiarity function and your function seems to lack a squareroot in the denominator:
Instead of:
function (.alpha, .beta, .do.norm = NA, .laplace = 0)
{
.alpha
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I have problems to parse immunoseq data for the tcR package.
I read issue #74 and #83 and already applied to modification to parse.immunoseq3 as suggested to avoid the error message regarding the cou…
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Le process se déroule bien (voir log) : les fichiers jp2 sont générés pour R10m et R20m. Un fichier MTD_TL.xml est généré mais impossible de l'ouvrir avec SNAP (file unhandled).
Reste à tester : util…
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Hi Vadim,
I have a question about a tcR function 'find.clonotype'. I am reading through tcR vignette. One of the examples is to show how to search for a target CDR3 sequence. As shown in the vignet…
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The current function seems to result in errors when there are no singletons but duplicates. It runs the third part of the code (i.e. else) but the value for f1 is NA since this is the value of counts …
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Is it possible to create an additional parameter in this function: .do.norm? Currently it is not possible to specify .do.norm = TRUE when calling the entropy function. (Although you might get the sugg…
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When using the vis.kmer.histogram function, It would be interesting to have the x-axis sorted on decreasing frequency instead of alphabetically. Maybe it is an option to include an additional paramete…
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I'm trying to parse a few hundred immunoSEQ files and I don't think it's ID'ing the columns. Could their be a new format that is not compatible?