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While pairing on styling citation references with @jwijay, we came across a desired use case for recording both the `title` of a cited article, as well as the `name` of the journal/publication that di…
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Using the Schaeffer, OH subcortical, King and a 3-part amygdala ROI, create a time series output for each run based on the subject
Relates to:
> [PROC] fmriprep (V1.5) will be run for the pre-p…
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When attempting to run your segmentation, I'm running into an issue with line 122 of this function (see below). The error message I receive is: 'Error using == \n Matrix dimensions must agree'
http…
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Hi, I installed the latest version of fmriprep (v20.0.1rc) in my servers by using pip command. I would like to get processed data in fsLR-den32k space. It looks fsLR no long need to be included in the…
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Run fmridenoise on all subjects
> [PROC] fmriprep (V1.5) will be run for the pre-processing (Esteban et al. 2019). Pre-op structural MRIs will be used for co-registration of post-op images. fmride…
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What we need:
Atlases for King et al 2019, the amygdala ROI on Templateflow.
Relates to:
> [PROC] fmriprep (V1.5) will be run for the pre-processing (Esteban et al. 2019). Pre-op structura…
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I'm curious about cifti files generated by fmriprep vs Erin Dickie's ciftify.
Erin Dickie had this to say: "So the ciftify one's are in a "space" and resolution (and surface-based registration al…
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At some point we should have a way of "label-izing" volumes like we do for surfaces. Freesurfer probably has utilities/files for this but I've never looked or worked with them (probably aseg.mgz), and…
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During reconstruction, for the pre-defined pipelines, it would be helpful that the users can choose the atlas(es) of their interest.
In addition to existing Schaefer 17 RSN version, I would recommend…
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As extension to #41, change definition of a cluster to be constrained to lie within a parcel as based on ROI atlas provided for the surface/volume. This matches the behavior of some Connectome Workben…