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### Feedback
As seen [here](https://github.com/home-assistant/core/issues/86588), the JuiceNet cloud has been migrated to a new platform which isn't compatible with the integration.
There is a wor…
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Hi xiaofei,
I used the Juicerbox YaHS you provided to generate the .assembly and .hic files, and finally generated out_JBAT.assembly ，out_JBAT.assembly.agp and out_JBAT.hic. However, I found that th…
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Hi, I have a issue about the hicpro2juicebox.sh. When I use the commond ''bash hicpro2juicebox.sh -i /mypath/GSM.allValidPairs -j /juicertools_path/juicer_tools.1.9.9_jcuda.0.8.jar -g hg19 -o /myoutpa…
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Hi,
Thank you for this impressive tool, I am very excited to try it!
I am not sure about which set of contigs to choose for input. If I understand correctly HapHic takes care of the collapsed c…
jolbi updated
8 months ago
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Hello @zengxiaofei ,
I used hifiasm with hifi and HiC data, and generate haplotype-specific data, including p_ctg.fa, p_utg.fa, r_utg.fa, and hap*.p_ctg.fa.
As you mentioned in the tutorial, if I wa…
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**Describe the bug**
A portion of the heatmap is outside of the chromosome boundary. It also appears that the boundaries of the contigs are shifted upwards and need to be shifted downwards to properl…
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Hi,
I am providing my own chrom_sizes.txt file for juicer pre to dump a .hic file. The chromosome names in my file are like "chr1, chr2, chr3,...". However in the .hic file, the chromosome names ar…
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Hi,
I want to use my own HiC data, I used juicer to convert the 7 columns of validpairs into a .hic file, but the error is reported as follows, what is the reason?
```
python ~/software/ABC-Enhance…
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Which jar file is it, juicer_tools.xxx.jar, or jcuda.xxx.jar, or juicebox_clt_xxx.jar, different documents have different instructions, I don't know which one to use
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Hi everyone,
I have a question about A/B map in juicebox.js web page when loading "B map". I would like to know the meaning of A/B map means that the contact counts are taken logarithmically and th…