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I have a model with 2 estimation steps: FOCEI followed by NUTS.
```
$ESTIMATION
SIGL=9 NSIG=2
NOABORT
METHOD=CONDITIONAL INTERACTION
LAPLACIAN
NUMERICAL SLOW
MAXEVAL=9999 PRINT=…
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Consider the following:
```julia
xs = ...
ys = ...
observations = Gen.DynamicAssignment()
for (i, y) in enumerate(ys)
observations[(:y, i)] = y
end
(trace, _) =…
fsaad updated
5 years ago
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Hi Prof.Robitzsch,
What all changes need to be made to ``mcmc.3pno.testlet`` to make it a logistic testlet model? One would be to change the link function from pnorm to plogis in #draw latent respons…
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Summary of my object is as follows.
> summary(cdrHyper.ego)
Length Class Mode
egos 47 data.frame list
alters 47 data.frame list
egoWt 5911 -none- numer…
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The next step is to implement MCMCMC for sampling trees. The process essentially consists of a cold chain and 2
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For Metropolis-Hastings MCMC, acceptance is a function of some score of the current state and the proposed next state, so the line
https://github.com/gerrymandr/RunDMCMC/blob/3e6cde710e3287bf1d64d73a…
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Hi there,
I would like to use PyMC for pseudo marginal MCMC (likelihood is replaced by unbiased estimator, this still converges to the correct invariatn distribution). Based on #584 I can easily let …
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I am running a FUBAR analysis using hyphy (v 2.3.14 just compiled from github). While attempting to run FUBAR using the following code:
import phyphy
myhyphy = phyphy.HyPhy(executable = "HYPHYMP",…
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There is already `@Citation` annotation created for `BEASTObject`, to link the publication to the model and implementation.
I created `PackageCitations` to pull out all citations from installed pac…
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Today I received this message from CRAN.
> Please remind yourselves what §1.1.3.1 of 'Writing R Extensions' says about using packages listed in Suggests conditionally.
>
> Packages MCMCpack, fts…