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Create a SWB workspace with R studio to run Achilles
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Hi,
Hope you are well.
As part of the Great Ormond Street Hospital (GOSH) OMOP project we have asked on the OHDSI forum for the following vocabularies to be added:
Forum post: https://foru…
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@vasanthi014, having an error from the webapi.
"Object 'OMOP_CDM.RESULTS.ACHILLES_RESULTS' does not exist or not authorized."
It seems like ACHILLES_RESULTS has not been created fro…
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Use OMOP CDM DDL machinery in new branch.
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This task expect Trino (query engine) to be containerized and called in container platform.
In this phase, Trino should be able to interact directly with OMOP CDM database of PostgreSQL of #2 by shar…
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I have created a new OHDSI Docker container for the data build tool (dbt), to support the OHDSI community in using dbt for OMOP CDM conversion ETL.
The new GitHub repo is here:
https://github.com/…
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- List the target cancer type.
- Enumerate target variables and mappings to OMOP standard concepts.
- Describe target document types.
- Provide recommendations on how to handle dates.
- Point to D…
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This task expect PostgreSQL (database) to be containerized and called in container platform.
In this phase, PostgreSQL should be able to spined as a OMOP CDM foundation, the container have to inclu…
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OMOP CDM Configurations:
https://github.com/OHDSI/WebAPI/wiki/CDM-Configuration
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TYPE | NOTES
-- | --
ITEM | Where should we store DRG codes?
FORUM POST | http://forums.ohdsi.org/t/most-appropriate-omop-table-to-house-drg-information/1591/8
SOLUTION | DRGs should be stored in …