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Hi,
I have been testing the current SpectraST 5.0 Linux 64bit executable from the OpenMS thirdparty repository and found some problems.
1) There seems to be some kind of numeric problem since Sp…
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Hi,
depending on the data, it seems that internal calibration might increase median error and MAD.
e.g.,:
ppm stats before calibration: median = -0.167483 MAD = 0.498862
ppm stats after calibrati…
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I found several issues in XTandemAdapter about how it handles variable and fixed modifications.
I used the latest git (Release1.11.1-2996-g13ffbd7) of OpenMS, but I think it did not change a lot sinc…
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As a first step to being ready for Qt6 I suggest fixing deprecation warnings by requiring a newer Qt5 and use non-deprecated functions/classes only.
We have some notes in our code already thanks to…
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Sageadapter uses missed_cleavages, MSGF max_missed_cleavages etc.
See also #3255
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Hi,
I'm trying to use the application but I'm having problems.
In the conda installation the environment.yml is named: streamlit-env so I think you should update the manual to:
conda activate str…
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The ProteomicsLFQ documentation should be improved (especially since it's now being used in nf-core workflows). See current state here: https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Do…
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Every single time users are confused how to use the correct scores when doing non-standard workflows:
- [ ] Fido needs to do autoscore switching like all other inference tools
- [ ] FDR and IDFilt…
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Hey, is there a specific reason for `IntensityType` to be a `float` in `Peak1D` and `Peak2D`, but `double` in `ChromatogramPeak`?
I noticed this while writing a templated method that works on both `M…
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I only seem to be able to call the centroided feature finder. There is no information on how to call the others.