-
```
What steps will reproduce the problem?
0. Using the current 2.3 codebase:
1.Run a pipeline step using @transform (ie:
@transform([align_to_viral,align_to_bacterial],suffix(".cat"),".qc")
2.Mak…
-
```
Any time the output files need to be determined at run time (such as with
@split and @subdivide), when a job starts, the files *currently* present that
match the output's regular expression are …
-
```
I've been able to install ruffus 2.2 using pip, but trying 2.4beta3 gives an
error (easy_install still works fine). Could there be some packaging issue
here?
Installing in a virtualenv, the e…
-
Dear All,
on specifying a regex for merging BAM files, ruffus returns an error (vicious circle in mergeBAMfiles).
I have narrowed this down to the following line:
``` python
MAPPINGTARGETS.append(mer…
-
```
Command line parsing code for Ruffus scripts should be put into the library.
from Martin Goodson
```
Original issue reported on code.google.com by `bunbu...@gmail.com` on 11 Mar 2011 at 4:37
-
```
What steps will reproduce the problem?
1. Have easy_install installed in your computer
2. $: easy_install ruffus
3. It will complain the module 'multiprocessing' doesn't exist.
If you install it m…
-
```
Hi,
thank you very much for developing this, I have been looking for a good
alternative to make for a long time.
I want to run a pipeline into Sun Grid Engine system.
I am not a systemist, but I…
-
```
I tried out the latest (97518ac8f0e0) version of ruffus and came across a
problem with the sqlite history file (traceback below).
Our system makes uses the Lustre filesystem and creating sqlite d…
-
```
Are you planning to provide compatibility with python 3.x ?
Thanks,
F.
```
Original issue reported on code.google.com by `fninocor...@gmail.com` on 17 May 2013 at 12:41
-
```
What steps will reproduce the problem?
1. Define a @transform with multiple inputs() pattens
What is the expected output? What do you see instead?
Expected: input_files argument of task function …