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Example:
```
vault keep --view mine
```
lists a few files and then gives
```
pipelines/Pilot_UKB/qc/ELGH_nfCore/work/06/94b5f115c398030ea983c6dc433e17/minimal_dataset/ELGH_VAL11509205.double…
-
Dear Wei,
Happy New Year!! Do we have best recommendation for GRM generation, for example, minMAFforGRM , numRandomMarkerforSparseKin, relatednessCutoff
Thanks.
Shicheng
createSparseGRM(…
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I don't do genetics so this could very well be a misunderstanding but it seems to me that the genetics example in https://github.com/bids-standard/bids-examples/tree/master/genetics_ukbb contains MRI …
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There are a couple of files which I cannot relate to any publicly available file published from the GWAS catalog or the Neale UKBB dataset needed for running the V2D pipeline.
Some files that are …
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Hi,
**Context:**
I am currently working on UKBB 450K WES data processing in DNAnexus environment. My end goal is to generate gene burden matrix table for entire data. Since, it can be costly and t…
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**Summary**
Tasks to follow up on email Subject: "Re: Plan to decomisioning last of the PSD tin and VM's", on Tuesday, 1 September 2020 at 14:16.
Following the agreed 4 step plan:
1. Decommis…
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Hi Joelle,
I was comparing the results from gene-based tests in step 2 (no `pred` file) to SKAT R package for different binary/quantitative traits using a single gene with the same number of varian…
Ojami updated
2 years ago
-
Hi,
Is there any specific reason why `create_finemapper_jobs.py` creates overlapping regions in `--jobs-file` ?
For instance, `head -2 polyfun_all_jobs.txt`
```
python3 finemapper.py --chr 22 -…
Ojami updated
2 years ago
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Since the last time when UKBB GWAS studies were mapped to EFO, the ontology has suffered significant changes. The most notable the dynamic imports of some other ontologies (MONDO, HP, etc.). Due to th…
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Hi Tian,
Hope you enjoyed the holidays. I am having this error when trying to run PRScs on `iter-900`:
```
/project/ritchie/tools/PRScs/mcmc_gtb.py:55: RuntimeWarning: divide by zero encountere…