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For consensusXML input the number of outputs depends on the contents of the input.
In order to automatize this step it would be great to just specify a prefix of the outputs.
For instance, one…
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Hi! We are using XTandemAdapter in our pipeline and we got an error with the message below. Seems like `PeptideIndexer` failed to match some peptides matched by X!Tandem.
```
Aho-Corasick done:
…
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When using the boost libraries provided by ubuntu for example, OpenMS compilation fails. I have run into this issue quite often, and frankly its annoying:
```
/usr/bin/ld: /usr/lib/gcc/x86_64-linu…
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Currently, we only have a DriftTimeType VCCS (==1/k0).
It seems to be common to convert 1/k0 to CCS using the formula: ```CCS=((2*pi/(((mz*charge)*28.0134/(mz*charge+28.0134)*1.66053904*(10^(-27)))*1…
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Submitted by aiche on 2012-04-03 12:57:12
Currently TOPPBase checks if a parameter is correctly (e.g., is set for required parameters or has one of the valid values) at the time when it is accessed a…
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User defined mods in `unimod.xml` appear as `unknown modification` in the `MSGFPlusAdapter` search results.
Running MS-GF+ from the command line with a user defined mod `XYZ` in `msgfplus_mods.txt`
…
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Hi,
a new problem has appeared. I always get the message:
Error in (function (classes, fdef, mtable) :
cannot find inherited method for function 'dbGetQuery' for signature '"mzRpwiz", "characte…
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We are currently facing this issue for
- Map
- CVTermList
- DataProcessing
- Precursor
which all have a member of type `std::map`, `Map`, `std::set`, `std::set` or inherit from it. Currently…
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Hello
I am a big fan of TOPPView for the visualization of LCMS datasets.
Recently, I noticed a problem of mzML files or TOPPView (but I think it is a result of Orbitrap problems that report the…
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Hi,
Saturation of the detector in mass spectrometry is quite common in metabolomic. Obviously, these saturated MS1 or MS2 features cannot be compared properly between samples. Decreasing the sample c…