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I noticed the hybridization of each atom was set as `UNSPECIFIED` when working on a ligand from a graphml object I think this is due to the `to_dict` method not saving the hybridization of the atom. …
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## **Module/Workflow/Library affected**
openmm module
## **Expected behavior**
run openmm
## **Actual behavior**
[2024-11-13 08:33:27,417 libutil ERROR] No output models generated. Chec…
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Python allows defining the normal arithmetic operations to classes using [Special method names](https://docs.python.org/3/reference/datamodel.html#special-method-names), specifically [basic customizat…
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Was looking over some things to work up my AtomsBase intro material for the MolSSI workshop and ran across this issue in an environment that had both AtomsBase and Molly in it. We should think and/or …
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**Avogadro version: (please complete the following information from the About box):**
- Avogadrolibs: 1.99.0-754-g9e353edf
- Qt: 5.15.15 or 6.8.0
- Format: Both the current Flatpak `beta` branch…
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Source ticket: https://help.oac.cdlib.org/a/tickets/133623
Collection Registry entry created:
https://registry.cdlib.org/admin/library_collection/collection/26946
ATOM feed:
https://pad-nuxeo.…
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Source ticket: https://help.oac.cdlib.org/a/tickets/133623
Collection Registry entry created:
https://registry.cdlib.org/admin/library_collection/collection/28126
ATOM feed:
https://pad-nuxeo.…
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Source ticket: https://help.oac.cdlib.org/a/tickets/133623
Collection Registry entry created:
https://registry.cdlib.org/admin/library_collection/collection/27895
ATOM feed:
https://pad-nuxeo.…
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Source ticket: https://help.oac.cdlib.org/a/tickets/133623
Collection Registry entry created:
https://registry.cdlib.org/admin/library_collection/collection/26759
ATOM feed:
https://pad-nuxeo.…
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Source ticket: https://help.oac.cdlib.org/a/tickets/133623
Collection Registry entry created:
https://registry.cdlib.org/admin/library_collection/collection/26758
ATOM feed:
https://pad-nuxeo.…