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Add coactivation-based parcellation algorithm, as described in Bzdok et al. (2013).
### References
Bzdok, D., Laird, A. R., Zilles, K., Fox, P. T., & Eickhoff, S. B. (2013). An investigation of …
tsalo updated
2 years ago
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Hello. I am testing kwyk (docker://neuronets/kwyk:version-0.4-gpu) on brainlife.io
I've noticed that the output segmentation/parcellation image contains areas outside the brain segmented.
Like t…
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I would like to use AutoSeg to segment brain into 8 regions. I find it difficult to use AutoSeg for this task. I have some questions:
1. What is "Common coordinate image" in my case?
2. What is "Tis…
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Hi, when using openmap t1 for segmentation with Brain tumor data there are so many empty regions in the output. How to overcome this? Are there any special preprocessing tasks to deal with tumor datas…
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### Expected situation
I attempted to parcellate an object using the Schaefer dataset as per the bottom of this walkthrough:
https://netneurolab.github.io/neuromaps/user_guide/transformations.html
…
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using all neocortical vertices is computationally expensive and likely unnecessary. Previously we used a schaeffer1000 parcellation, but probably any of the widely used schemes would be fine. Could al…
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Hi,
I'm running the Docker image on a Mac M1. After the FreeSurfer parcellation finishes without errors, I'm encountering this error:
> /opt/create_3d_brain_docker.sh: line 123: 4469 Illegal i…
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Hi all, we're working on an infant version of fMRIPrep ([nibabies](https://github.com/nipreps/nibabies)), and were wondering how much we can expect fmridenoise to work with the outputs without configu…
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Would be good to have the option of using parcellation files that include eye balls.