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Hello,
as far as I understand, NeuroKit2 has functions for microstates only at individual level. I am trying to use it (with MEG) also at group level. Is there a function already, or do I have to w…
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Hi,
Thank you for developing this incredibly useful pipeline. It has been instrumental in my scRNA-seq analysis work. I have encountered an interesting issue while using the script provided: when u…
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Significance analysis for clustering with single-cell RNA-sequencing data
https://www.nature.com/articles/s41592-023-01933-9
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Hi, Rongting @Rongtingting
Thank you for your prompt answer last time. Sorry to bother you again. You know, sometimes we might not know which ones are normal, so we might start off without this nor…
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**Is your feature request related to a problem? What value do you see this adding? Please describe.**
Right now, iDEP provides hierarchical clustering and k-means clustering in the clustering tab. Bu…
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Thanks for the wonderful tool!
I was wondering whether it would be okay to perform MILO analysis based on a different latent space and KNN than those used for building the initial UMAP and clusters…
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Prof. @AntJam-Howell ,
When doing cluster analysis, is it generally best to have as many relevant variables as possible for your inputs, or do you need to be cautious about using correlated variables…
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Include cluster analysis, differential expression, and Go ontology
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Collect the known actives (positive controls) for retrospective analysis. For a given target, these can be found in the scientific literature, patent literature or public databases such as IUPHAR/BPS[…
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**Describe the bug**
I run a simple script that creates 1 parent test case (`SUITE`) with 5 child test cases (`STEP`), logs some unique error messages for each test as well as some common messages fo…